Publications

Publications 2018

Wednesday, 17 January 2018

Journal articles
  • Bridgeman, S. C., G. C. Ellison, P. E. Melton, P. Newsholme and C. D. S. Mamotte (2018). "Epigenetic effects of metformin: From molecular mechanisms to clinical implications." Diabetes Obes Metab 20(7): 1553-1562. [pubmed]
  • Bond-Smith, D. and J. Stone (2018). "Methodological challenges and updated findings from a meta-analysis of the association between mammographic density and breast cancer." Cancer Epidemiol Biomarkers Prev: epub. [pubmed]
  • Cadby, G., P. E. Melton, N. S. McCarthy, M. Almeida, S. Williams-Blangero, J. E. Curran, J. L. VandeBerg, J. Hui, J. Beilby, A. W. Musk, A. L. James, J. Hung, J. Blangero and E. K. Moses (2018). "Pleiotropy of cardiometabolic syndrome with obesity-related anthropometric traits determined using empirically derived kinships from the Busselton Health Study." Human Genetics 137(1): 45-53. [pubmed]
  • Chambers, N. A., A. Ramgolam, D. Sommerfield, G. Zhang, T. Ledowski, M. Thurm, M. Lethbridge, M. Hegarty and B. S. von Ungern-Sternberg (2018). "Cuffed vs. uncuffed tracheal tubes in children: a randomised controlled trial comparing leak, tidal volume and complications." Anaesthesia 73(2): 160-168. [pubmed]
  • Chiha, W., C. J. LeVaillant, C. A. Bartlett, A. W. Hewitt, P. E. Melton, M. Fitzgerald and A. R. Harvey (2018). "Retinal genes are differentially expressed in areas of primary versus secondary degeneration following partial optic nerve injury." PLOS ONE 13(2): e0192348. [pubmed]
  • Cox, D. W., S.-K. Khoo, G. Zhang, K. Lindsay, A. D. Keil, G. Knight, J. E. Gern, I. A. Laing, J. Bizzintino and P. N. Le Souëf (2018). "Rhinovirus (RV) is the most common virus and RV-C the most common RV species in paediatric intensive care respiratory admissions." European Respiratory Journal:  52(2): 1800207. [link]
  • Felix, J. F., B. R. Joubert, A. A. Baccarelli, ..., P. Melton, ..., C. L. Relton, V. W. V. Jaddoe and S. J. London (2018). "Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium." Int J Epidemiol 47(1): 22-23u. [pubmed]
  • Garratt, E., K. Lillycrop, P. Titcombe, P. Melton, R. Murray, S. Barton, R. Clarke-Harris, P. Costello, J. Holbrook, J. Hopkins, C. Childs, C. Paras-Chavez, P. Calder, T. Mori, L. Beilin, G. Burdge, P. D. Gluckman, H. Inskip, N. Harvey, M. Hanson, R.-C. Huang, C. Cooper and K. Godfrey (2018). "Differential SLC6A4 methylation: a predictive epigenetic marker of adiposity from birth to adulthood." International Journal of Obesity: in press.
  • Glahn, D., V. Nimgaonkar, H. Raventós, J. Contreras, A. McIntosh, A. Jablensky, N. McCarthy, N. Blackburn, J. Peralta, S. Ament, F. McMahon, M. Bucan, J. Curran, L. Almasy, R. Gur and J. Blangero (2018). "Rediscovering the Value of Families for Psychiatric Genetics Research." Mol Psychiatry: epub. [pubmed]
  • Hoeppner, T., M. Borland, F. E. Babl, J. Neutze, N. Phillips, D. Krieser, S. R. Dalziel, A. Davidson, S. Donath, K. Jachno, M. South, A. Williams, G. Zhang and E. Oakley (2017). "Influence of weather on incidence of bronchiolitis in Australia and New Zealand." J Paediatr Child Health 53(10): 1000-1006. [pubmed]
  • Hugo, H. J., A. Zysk, P. Dasari, K. Britt, J. L. Hopper, J. Stone, E. W. Thompson and W. V. Ingman (2018). "InforMD: a new initiative to raise public awareness about breast density." ecancermedicalscience 12: 807. [pubmed]
  • Khan, F. F., P. E. Melton, N. S. McCarthy, B. Morar, J. Blangero, E. K. Moses and A. Jablensky (2018). "Whole Genome Sequencing of 91 Multiplex Schizophrenia Families Reveals Increased Burden of Rare, Exonic Copy Number Variation in Schizophrenia Probands and Genetic Heterogeneity." Schizophrenia Research: in press. [link]
  • Laurence, C., L. van der Merwe, G. Zhang, P. Le Souef and M. Levin (2018). "Association between pro-inflammatory alleles and allergic phenotypes in Xhosa adolescents." Pediatr Allergy Immunol 29(3): 311-317. [pubmed]
  • Li, S., E. M. Wong, M. Bui, T. L. Nguyen, J.-H. E. Joo, J. Stone, G. S. Dite, G. G. Giles, R. Saffery, M. C. Southey and J. L. Hopper (2018). "Causal effect of smoking on DNA methylation in peripheral blood: a twin and family study." Clinical Epigenetics 10(18). [pubmed]
  • Li, S., E. Wong, M. Bui, T. Nguyen, J. Joo, J. Stone, G. Dite, P.-A. Dugue, R. Milne, G. Giles, R. Saffery, M. Southey and J. Hopper (2018). "Inference about causation between body mass index and DNA methylation in blood from a twin family study." International Journal of Obesity: 10: 18. [pubmed]
  • Li, S., E. M. Wong, P.-A. Dugué, A. F. McRae, E. Kim, J.-H. E. Joo, T. L. Nguyen, J. Stone, G. S. Dite, N. J. Armstrong, K. A. Mather, A. Thalamuthu, M. J. Wright, D. Ames, R. L. Milne, J. M. Craig, R. Saffery, G. W. Montgomery, Y.-M. Song, J. Sung, T. D. Spector, P. S. Sachdev, G. G. Giles, M. C. Southey and J. L. Hopper (2018). "Genome-wide average DNA methylation is determined in utero." International Journal of Epidemiology: dyy028-dyy028. [pubmed]
  • Liyanage, U. E., M. H. Law, J. S. Ong, A. E. Cust, G. J. Mann, S. V. Ward, Melanoma Meta-Analysis Consortium, P. Gharahkhani, M. M. Iles and S. MacGregor (2018). "Polyunsaturated fatty acids and risk of melanoma: A Mendelian randomisation analysis." International Journal of Cancer 143(3): 508-514. [pubmed]
  • McCarthy, N. S., C. Vangjeli, P. Surendran, A. Treumann, C. Rooney, E. Ho, P. Sever, S. Thom, A. D. Hughes, P. B. Munroe, P. Howard, T. Johnson, M. Caulfield, D. C. Shields, E. O'Brien, D. J. Fitzgerald and A. V. Stanton (2018). "Genetic variants in PPARGC1B and CNTN4 are associated with thromboxane A2 formation and with cardiovascular event free survival in the Anglo-Scandinavian Cardiac Outcomes Trial (ASCOT)." Atherosclerosis 269: 42-49. [pubmed]
  • McLean, K. E. and J. Stone (2018). "Role of breast density measurement in screening for breast cancer." Climacteric: 1-7. [pubmed]
  • Nustad, H., M. Almeida, A. Canty, M. LeBlanc, C. Page and P. Melton (2018). "Epigenetics, heritability and longitudinal analysis." BMC Genetics 19(Suppl 1): 77. [pubmed]
  • Owens, L., I. Laing, A., G. Zhang, S. Turner and P. N. Le Souëf (2018). "Airway function in infancy is linked to airflow measurements and respiratory symptoms from childhood into adulthood." Pediatric Pulmonology 53: 1082-1088. [link]
  • Owens, L., I. A. Laing, G. Zhang, S. Turner and P. N. Le Souëf (2018). "Prevalence of allergic sensitization, hay fever, eczema, and asthma in a longitudinal birth cohort." Journal of Asthma and Allergy 11: 173-180. [link]
  • Parmar, P., E. Lowry, G. Cugliari, M. Suderman, R. Wilson, V. Karhunen, T. Andrew, P. Wiklund, M. Wielscher, S. Guarrera, A. Teumer, B. Lehne, L. Milani, N. de Klein, P. P. Mishra, P. E. Melton, P. R. Mandaviya, S. Kasela, J. Nano, W. Zhang, Y. Zhang, A. Uitterlinden, A. Peters, B. Schöttker, C. Gieger, D. Anderson, D. I. Boomsma, H. J. Grabe, J. H. Veldink, J. B. Meurs, L. van den Berg, L. J. Beilin, L. Franke, M. Loh, M. M. J. van Greevenbroek, M. Nauck, M. Kähönen, M. A. Hurme, O. T. Raitakari, O. H. Franco, P. E. Slagboom, P. van der Harst, S. Kunje, S. B. Felix, T. Zhang, W. Chen, T. A. Mori, A. Bonnefond, B. T. Heijmans, T. Muka, J. S. Kooner, K. Fischer, M. Waldenberg, P. Froguel, R. C. Huang, T. Lehtimäki, W. Rathmann, C. L. Relton, G. Matullo, H. Brenner, N. Verweij, S. Li, J. C. Chambers and M. J. Järvelin (2018). "Meta-analysis of maternal prenatal smoking GFI1-locus and cardio-metabolic phenotypes in adults." EBioMedicine: in press.
  • Poole, A., Y. Song, H. Brown, P. H. Hart and G. B. Zhang (2018). "Cellular and molecular mechanisms of vitamin D in food allergy." Journal of Cellular and Molecular Medicine 22(7): 3270-3277. [link]
  • Ramgolam, A., G. L. Hall, G. Zhang, M. Hegarty and B. S. von Ungern-Sternberg (2018). "Deep or awake removal of laryngeal mask airway in children at risk of respiratory adverse events undergoing tonsillectomy—a randomised controlled trial." British Journal of Anaesthesia 120(3): 571-580. [pubmed]
  • Ramgolam, A., G. L. Hall, G. Zhang, M. Hegarty and B. S. von Ungern-Sternberg (2018). "Inhalational versus Intravenous Induction of Anesthesia in Children with a High Risk of Perioperative Respiratory Adverse Events: A Randomized Controlled Trial." Anesthesiology. 128(6): 1065-1074. [pubmed]
  • Ravensdale, J. T., D. T. W. Xian, C. M. Wei, Q. Lv, X. Wen, J. Guo, R. Coorey, P. LeSouef, F. Lu, G. Zhang and G. A. Dykes (2018). "PCR screening of antimicrobial resistance genes in faecal samples from Australian and Chinese children." J Glob Antimicrob Resist 14: 178-181. [pubmed]
  • Saiganesh, A., B. Hales, J., Y. Li, P. G. Holt, P. Le Souëf, N. and G. Zhang (2018). "A marked shift in innate and adaptive immune response in Chinese immigrants living in a western environment." Allergy: epub. [pubmed]
  • Song, Y., R. Aguilar, J. Guo, M. N. Manaca, A. Nhabomba, T. K. Berthoud, S. K. Khoo, S. Wiertsema, A. Barbosa, L. Quinto, I. A. Laing, A. Mayor, C. Guinovart, P. L. Alonso, P. N. LeSouef, C. Dobano and G. B. Zhang (2018). "Cord Blood IL-12 Confers Protection to Clinical Malaria in Early Childhood Life." Sci Rep 8(1): 10860. [pubmed]
  • Song, Y., M. Dahl, W. Leavitt, J. Alvord, C. Y. Bradford, K. H. Albertine and J. J. Pillow (2018). "Vitamin A Protects the Preterm Lamb Diaphragm Against Adverse Effects of Mechanical Ventilation." Frontiers in Physiology 9: 1119. [link]
  • Song, Y., H. Higgins, J. Guo, K. Harrison, E. N. Schultz, B. Hales, E. Moses, J. Goldblatt, N. Pachter and G. Zhang (2018). "Clinical significance of circulating microRNAs as markers in detecting and predicting congenital heart defects in children." Journal of Translational Medicine 16(1): 42. [publink]
  • Stone, J. (2018). "Should breast cancer screening programs routinely measure mammographic density?" Journal of Medical Imaging and Radiation Oncology 62(2): 151-158. [publink]
  • Tintle, N., D. Fardo, M. de Andrade, S. Aslibekyan, J. Bailey, J. Lorenzo-Bermejo, R. Cantor, S. Ghosh, P. Melton, X. Wang, J. MacCluer and L. Almasy (2018). "Genetic Analysis Workshop 20: methods and strategies for the new frontiers of epigenetics and pharmacogenomics." BMC Proceedings 12(Suppl 9): 26. [pubmed]
  • Wallace, H., G. Cadby, P. E. Melton, M. Fear, S. Falder, M. Crowe, L. Martin, K. Marlow and F. Wood (2018). "Genetic influence on scar outcome after burn injury: genome-wide association study and pathway analysis." Burns: in press.
  • Wu, L., W. Shi,, J. Long, ... J. Stone, … , G. Chenevix-Trench, W. Zheng (2018). "A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer." Nature Genetics 50(7): 968-978. [link]
  • Yong, H. E. J., P. Murthi, S. P. Brennecke and E. K. Moses (2018). “Genetic Approaches in Preeclampsia.” Methods Mol Biol 1710: 53-72. [pubmed]
Theses
  • Gokhale-Agashe, D. S. (2018). Identification of Pre-eclampsia susceptibility genes. Doctor of Philosophy, The University of Western Australia. [link]

Publications 2017

Wednesday, 22 March 2017

Journal articles
  • Annamalay, A. A., I. Jroundi, J. Bizzintino, S.-K. Khoo, G. Zhang, D. Lehmann, I. A. Laing, J. Gern, J. Goldblatt, C. Mahraoui, R. Benmessaoud, C. Moraleda, Q. Bassat and P. Le Souëf (2017). "Rhinovirus C is associated with wheezing and rhinovirus A is associated with pneumonia in hospitalized children in Morocco." Journal of Medical Virology 89(4): 582-588. [link]
  • Bickerstaffe, A., T. Ranaweera, T. Endersby, C. Ellis, S. Maddumarachchi, G. E. Gooden, P. White, E. K. Moses, A. W. Hewitt and J. L. Hopper (2017). "The Ark: a customizable web-based data management tool for health and medical research." Bioinformatics 33(4): 624-626. [link]
  • Burton, A., G. Maskarinec, B. Perez-Gomez, C. Vachon, H. Miao, M. Lajous, R. López-Ridaura, M. Rice, A. Pereira, M. L. Garmendia, R. M. Tamimi, K. Bertrand, A. Kwong, G. Ursin, E. Lee, S. A. Qureshi, H. Ma, S. Vinnicombe, S. Moss, S. Allen, R. Ndumia, S. Vinayak, S.-H. Teo, S. Mariapun, F. Fadzli, B. Peplonska, A. Bukowska, C. Nagata, J. Stone, J. Hopper, G. Giles, V. Ozmen, M. E. Aribal, J. Schüz, C. H. Van Gils, J. O. P. Wanders, R. Sirous, M. Sirous, J. Hipwell, J. Kim, J. W. Lee, C. Dickens, M. Hartman, K.-S. Chia, C. Scott, A. M. Chiarelli, L. Linton, M. Pollan, A. A. Flugelman, D. Salem, R. Kamal, N. Boyd, I. dos-Santos-Silva and V. McCormack (2017). "Mammographic density and ageing: A collaborative pooled analysis of cross-sectional data from 22 countries worldwide." PLOS Medicine 14(6): e1002335. [link]
  • Cenin, D., P. O'Leary, I. Lansdorp-Vogelaar, D. Preen, M. Jenkins and E. Moses (2017). "Integrating personalised genomics into risk stratification models of population screening for colorectal cancer." Aust N Z J Public Health 41: 3-4. [link]
  • Chambers, N. A., A. Ramgolam, D. Sommerfield, G. Zhang, T. Ledowski, M. Thurm, M. Lethbridge, M. Hegarty and B. S. von Ungern-Sternberg (2017). "Cuffed vs. uncuffed tracheal tubes in children: a randomised controlled trial comparing leak, tidal volume and complications." Anaesthesia (Early View). [link]
  • Clifford, H. D., C. M. Hayden, S. K. Khoo, D. Naniche, I. M. Mandomando, G. Zhang, P. Richmond and P. N. Le Souef (2017). "Genetic Variants in the IL-4/IL-13 Pathway Influence Measles Vaccine Responses and Vaccine Failure in Children from Mozambique." Viral Immunol 30(7): 472-478. [pubmed]
  • Drake-Brockman, T. F., A. Ramgolam, G. Zhang, G. L. Hall and B. S. von Ungern-Sternberg (2017). "The effect of endotracheal tubes versus laryngeal mask airways on perioperative respiratory adverse events in infants: a randomised controlled trial." Lancet 389(10070): 701-708. [pubmed]
  • Gibbs, D. C., S. V. Ward, I. Orlow, G. Cadby, P. A. Kanetsky, L. Luo, K. J. Busam, A. Kricker, B. K. Armstrong, A. E. Cust, H. Anton-Culver, R. P. Gallagher, R. Zanetti, S. Rosso, L. Sacchetto, D. W. Ollila, C. B. Begg, M. Berwick, N. E. Thomas and The GEM Study Group (2017). "Functional melanoma-risk variant IRF4 rs12203592 associated with Breslow thickness: a pooled international study of primary melanomas." British Journal of Dermatology. [link]
  • Graff, M., R. A. Scott, A. E. Justice, ..., G. Cadby, ..., L. A. Cupples, R. J. F. Loos and T. O. Kilpeläinen (2017). "Genome-wide physical activity interactions in adiposity ― A meta-analysis of 200,452 adults." PLOS Genetics 13(4): e1006528. [link]
  • Hoeppner, T., M. Borland, F. E. Babl, J. Neutze, N. Phillips, D. Krieser, S. R. Dalziel, A. Davidson, S. Donath, K. Jachno, M. South, A. Williams, G. Zhang and E. Oakley (2017). "Influence of weather on incidence of bronchiolitis in Australia and New Zealand." J Paediatr Child Health 53(10): 1000-1006. [pubmed]
  • Hollams, E. M., S. M. Teo, M. Kusel, B. J. Holt, K. E. Holt, M. Inouye, N. H. De Klerk, G. Zhang, P. D. Sly, P. H. Hart and P. G. Holt (2017). "Vitamin D over the first decade and susceptibility to childhood allergy and asthma." Journal of Allergy and Clinical Immunology 139(2): 472-481.e479. [pubmed]
  • Hou, C., W. Li, Z. Li, J. Gao, Z. Chen, X. Zhao, Y. Yang, X. Zhang and Y. Song (2017). "Synthetic Isoliquiritigenin Inhibits Human Tongue Squamous Carcinoma Cells through Its Antioxidant Mechanism." Oxid Med Cell Longev 2017: 1379430. [pubmed]
  • Jacobs, M., G. Zhang, S. Chen, B. Mullins, M. Bell, L. Jin, Y. Guo, R. Huxley and G. Pereira (2017). "The association between ambient air pollution and selected adverse pregnancy outcomes in China: A systematic review." Sci Total Environ 579: 1179-1192. [pubmed]
  • Justice, A. E., T. W. Winkler, M. F. Feitosa, ..., G. Cadby, ..., I. B. Borecki, K. E. North and L. A. Cupples (2017). "Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits." Nat Commun 8: 14977. [link]
  • Karisnan, K., T. Mahzabin, A. J. Bakker, Y. Song, P. B. Noble, J. J. Pillow and G. J. Pinniger (2017). "Gestational age at time of in utero lipopolysaccharide exposure influences the severity of inflammation-induced diaphragm weakness in lambs." American Journal of Physiology-Regulatory, Integrative and Comparative Physiology 314(4): R523-R532. [pubmed]
  • Kirkham, L.-A. S., S. P. Wiertsema, K. J. Corscadden, T. Mateus, G. L. Mullaney, G. Zhang, P. C. Richmond and R. B. Thornton (2017). "Otitis-Prone Children Produce Functional Antibodies to Pneumolysin and Pneumococcal Polysaccharides." Clinical and Vaccine Immunology 24(3). [link]
  • Krishnan, K., L. Baglietto, J. Stone, J. A. Simpson, G. Severi, C. Evans, R. J. MacInnis, G. G. Giles, C. Apicella and J. L. Hopper (2017). "Longitudinal study of mammographic density measures that predict breast cancer risk." Cancer Epidemiol Biomarkers Prev 26(4): 651-660. [link]
  • Krishnan, K., L. Baglietto, J. Stone, C. McLean, M. C. Southey, D. R. English, G. G. Giles and J. L. Hopper (2017). "Mammographic density and risk of breast cancer by tumor characteristics: a case-control study." BMC Cancer 17: 859. [pubmed]
  • Lake, N. J., R. L. Taylor, H. Trahair, K. N. Harikrishnan, J. E. Curran, M. Almeida, H. Kulkarni, N. Mukhamedova, A. Hoang, H. Low, A. J. Murphy, M. P. Johnson, T. D. Dyer, M. C. Mahaney, H. H. H. Goring, E. K. Moses, D. Sviridov, J. Blangero, J. B. M. Jowett and K. Bozaoglu (2017). "TRAK2, a novel regulator of ABCA1 expression, cholesterol efflux and HDL biogenesis." Eur Heart J38(48): 3579-3587. [pubmed]
  • Lee, K. H., Y. Song, M. O'Sullivan, G. Pereira, R. Loh and G. Zhang (2017). "The Implications of DNA Methylation on Food Allergy." International Archives of Allergy and Immunology 173(4): 183-192. [link]
  • Li, S., E. Kim, E. M. Wong, J.-H. E. Joo, T. L. Nguyen, J. Stone, Y.-M. Song, L. B. Flander, R. Saffery, G. G. Giles, M. C. Southey, J. Sung and J. L. Hopper (2017). "Twin birth changes DNA methylation of subsequent siblings." Scientific Reports 7: 8463. [pubmed]
  • Li, S., E. M. Wong, T. L. Nguyen, J. E. Joo, J. Stone, G. S. Dite, G. G. Giles, R. Saffery, M. C. Southey and J. L. Hopper (2017). "Causes of blood methylomic variation for middle-aged women measured by the HumanMethylation450 array." Epigenetics 12(11): 973-981. [pubmed]
  • Lillycrop, K., R. Murray, C. Cheong, A. L. Teh, R. Clarke-Harris, S. Barton, P. Costello, E. Garratt, E. Cook, P. Titcombe, B. Shunmuganathan, S. J. Liew, Y.-C. Chua, X. Lin, Y. Wu, G. C. Burdge, C. Cooper, H. M. Inskip, N. Karnani, J. C. Hopkins, C. E. Childs, C. P. Chavez, P. C. Calder, F. Yap, Y. S. Lee, Y. S. Chong, P. E. Melton, L. Beilin, R.-C. Huang, P. D. Gluckman, N. Harvey, M. A. Hanson, J. D. Holbrook and K. M. Godfrey (2017). "ANRIL Promoter DNA Methylation: A Perinatal Marker for Later Adiposity." EBioMedicine 19: 60-72. [pubmed]
  • Mahzabin, T., J. J. Pillow, G. J. Pinniger, A. J. Bakker, P. B. Noble, R. B. White, K. Karisnan and Y. Song (2017). "Influence of antenatal glucocorticoid on preterm lamb diaphragm." Pediatr Res 82(3): 509-517. [pubmed]
  • McCarthy, N. S., J. C. Badcock, M. L. Clark, E. E. M. Knowles, G. Cadby, P. E. Melton, V. A. Morgan, J. Blangero, E. K. Moses, D. C. Glahn and A. Jablensky (2017). "Assessment of Cognition and Personality as Potential Endophenotypes in the Western Australian Family Study of Schizophrenia." Schizophrenia Bulletin  44(4): 908-921. [pubmed]
  • McCarthy, N. S., P. E. Melton, S. V. Ward, S. M. Allan, M. Dragovic, M. L. Clark, B. Morar, J. P. Rubio, J. Blangero, J. C. Badcock, V. A. Morgan, E. K. Moses and A. Jablensky (2017). "Exome array analysis suggests an increased variant burden in families with schizophrenia." Schizophr Res 185: 9-16. [pubmed]
  • Meldrum, S. J., Y. Li, G. Zhang, A. E. M. Heaton, N. D'Vaz, J. Manz, E. Reischl, B. V. Koletzko, S. L. Prescott and K. Simmer (2017). "Can polymorphisms in the fatty acid desaturase (FADS) gene cluster alter the effects of fish oil supplementation on plasma and erythrocyte fatty acid profiles? An exploratory study." Eur J Nutr: in press. [pubmed]
  • Michailidou, K., S. Lindström, J. Dennis, ..., R. Lloyd, ..., J. Stone, ..., G. Chenevix-Trench, J. Simard, P. Kraft and D. F. Easton (2017). "Association analysis identifies 65 new breast cancer risk loci." Nature 551(7678): 92-94. [pubmed]
  • Milne, R. L., K. B. Kuchenbaecker, K. Michailidou, ..., R. Lloyd, ..., J. Stone, ..., M. K. Schmidt, A. C. Antoniou and J. Simard (2017). "Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer." Nat Genet 49(12): 1767-1778. [pubmed]
  • Nguyen, T. L., Y. K. Aung, C. F. Evans, G. S. Dite, J. Stone, R. J. MacInnis, J. G. Dowty, A. Bickerstaffe, K. Aujard, J. M. Rommens, Y.-M. Song, J. Sung, M. A. Jenkins, M. C. Southey, G. G. Giles, C. Apicella and J. L. Hopper (2017). "Mammographic density defined by higher than conventional brightness thresholds better predicts breast cancer risk." International Journal of Epidemiology 46(2): 652-661. [pubmed]
  • Owens, L., I. A. Laing, G. Zhang and P. N. Le Souëf (2017). "Infant lung function predicts asthma persistence and remission in young adults." Respirology 22(2): 289-294. [link]
  • Ramgolam, A., G. L. Hall, D. Sommerfield, L. Slevin, T. F. E. Drake-Brockman, G. Zhang and B. S. von Ungern-Sternberg (2017). "Premedication with salbutamol prior to surgery does not decrease the risk of perioperative respiratory adverse events in school-aged children." BJA: British Journal of Anaesthesia 119(1): 150-157. [pubmed]
  • Saiganesh, A., B. J. Hales, S. Chen, E. Filipovska-Naumovska, G. Pereira, M. Garand, T. R. Kollmann, A. J. Currie, P. N. Le Souëf and G. Zhang (2017). "The Western Environment Reduces Innate Immune Cytokine Production in Chinese Immigrants." Journal of Allergy and Clinical Immunology 141(4): 1504-1507. [link]
  • Sharp, G. C., L. A. Salas, C. Monnereau, ..., P. E. Melton, ..., S. J. London, J. F. Felix and C. L. Relton (2017). "Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: Findings from the Pregnancy and Childhood Epigenetics (PACE) consortium." Human Molecular Genetics 26(20): 4067-4085. [link]
  • Song, Y., S.-K. Khoo, K. H. Lee, M. Mäkelä, T. Haahtela, P. LeSouëf and G. Zhang (2017). "Dual responses of CD14 methylation to distinct environments: a role in asthma and allergy." European Respiratory Journal 50(6): 1701228. [publink]
  • Song, Y., M. J. Schwager, V. Backer, J. Guo, C. Porsbjerg, S.-K. Khoo, I. A. Laing, E. K. Moses, P. LeSouëf and G. Zhang (2017). "Environment Changes Genetic Effects on Respiratory Conditions and Allergic Phenotypes." Scientific Reports 7(1): 6342. [pubmed]
  • Thomsen, L. C. V., N. S. McCarthy, P. E. Melton, G. Cadby, R. Austgulen, O. K. Nygård, M. P. Johnson, S. Brennecke, E. K. Moses, L. Bjørge and A.-C. Iversen (2017). "The antihypertensive MTHFR gene polymorphism rs17367504-G is a possible novel protective locus for preeclampsia." J Hypertens 35(1): 132-139. [pubmed]
  • Thornton, R. B., L.-A. S. Kirkham, K. J. Corscadden, H. L. Coates, S. Vijayasekaran, J. Hillwood, S. Toster, P. Edminston, G. Zhang, A. Keil and P. C. Richmond (2017). "No evidence for impaired humoral immunity to pneumococcal proteins in Australian Aboriginal children with otitis media." International Journal of Pediatric Otorhinolaryngology 92: 119-125. [link]
  • Thornton, R. B., L.-A. S. Kirkham, K. J. Corscadden, S. P. Wiertsema, A. Fuery, B. J. Jones, H. L. Coates, S. Vijayasekaran, G. Zhang, A. Keil and P. C. Richmond (2017). "Australian Aboriginal Children with Otitis Media Have Reduced Antibody Titers to Specific Nontypeable Haemophilus influenzae Vaccine Antigens." Clinical and Vaccine Immunology 24(4): e00556-00516. [link]
  • Weerasekera, L., C. Rudnicka, Q. X. Sang, J. E. Curran, M. P. Johnson, E. K. Moses, H. H. Goring, J. Blangero, J. Hricova, M. Schlaich and V. B. Matthews (2017). "ADAM19: A Novel Target for Metabolic Syndrome in Humans and Mice." Mediators Inflamm 2017: 7281986. [link]
Published abstracts
  • McCarthy, N., M. Clark, G. Cadby, J. Blangero, M. Dragovic, P. Melton, E. Moses, J. Badcock and A. Jablensky (2017). Association Between Polygenic Risk Score for Schizophrenia and Neurocognitive Measures in the Western Australian Family Study of Schizophrenia (WAFSS). European Neuropsychopharmacology. 27: S505-S506. [link]
  • McCarthy, N., Melton, J. Badcock, V. Morgan, M. Dragovic, B. Morar, E. Moses and A. Jablensky (2017). High Resolution Linkage and Association Analyses of Cognitive Deficit and Schizophrenia in the Western Australian Family Study of Schizophrenia. European Neuropsychopharmacology: in press.
  • Singh, B., D. Bond-Smith, N. McArdle, K. Ward, S. King, W. Noffsinger, S. Mukherjee, L. Palmer and G. Cadby (2017). Changing trends of obstructive sleep apnoea in Western Australia from 1988 to 2014. Journal of Sleep Research. 26: 61.
Theses
  • Jones, R. M. (2017). Identification of novel risk variants for sarcoma and other cancers by whole exome sequencing analysis in cancer cluster families. Doctor of Philosophy, The University of Western Australia. [link]
  • Poole, A. (2017). The role of vitamin D in the pathogenesis of childhood food allergies. BSc Honours, Curtin University.

Publications 2016

Monday, 20 March 2017

Book sections
  • Berwick, M., D. B. B. Buller, A. Cust, R. Gallagher, T. K. K. Lee, F. Meyskens, S. Pandey, N. E. E. Thomas, M. B. B. Veierod and S. Ward (2016). Melanoma Epidemiology and Prevention. Melanoma, Springer International Publishing. 167: 17-49. [link]
Journal articles
  • Annamalay, A. A., M. Lanaspa, S.-K. Khoo, L. Madrid, S. Acácio, Zhang, I. A. Laing, J. Gern, J. Goldblatt, J. Bizzintino, D. Lehmann, P. N. Le Souëf and Q. Bassat (2016). "Rhinovirus species and clinical features in children hospitalised with pneumonia from Mozambique." Tropical Medicine & International Health 21(9): 1171-1180. [pubmed]
  • Beaty, K. G., M. J. Mosher, M. H. Crawford and P. Melton (2016). "Paternal Genetic Structure in Contemporary Mennonite Communities from the American Midwest." Hum Biol 88(2): 95-108. [pubmed]
  • Blangero, J., T. M. Teslovich, X. Sim, M. A. Almeida, G. Jun, T. D. Dyer, M. Johnson, J. M. Peralta, A. Manning, A. R. Wood, C. Fuchsberger, J. W. Kent, Jr., D. A. Aguilar, J. E. Below, V. S. Farook, R. Arya, S. Fowler, T. W. Blackwell, S. Puppala, S. Kumar, D. C. Glahn, E. K. Moses, J. E. Curran, F. Thameem, C. P. Jenkinson, R. A. DeFronzo, D. M. Lehman, C. Hanis, G. Abecasis, M. Boehnke, H. Goring, R. Duggirala, L. Almasy and T. D. G. Consortium (2016). "Omics-squared: human genomic, transcriptomic and phenotypic data for genetic analysis workshop 19." BMC Proc 10(Suppl 7): 71-77. [pubmed]
  • Burton, A., G. Byrnes, J. Stone, R. M. Tamimi, J. Heine, C. Vachon, V. Ozmen, A. Pereira, M. L. Garmendia, C. Scott, J. H. Hipwell, C. Dickens, J. Schuz, M. E. Aribal, K. Bertrand, A. Kwong, G. G. Giles, J. Hopper, B. Perez Gomez, M. Pollan, S. H. Teo, S. Mariapun, N. A. Taib, M. Lajous, R. Lopez-Riduara, M. Rice, I. Romieu, A. A. Flugelman, G. Ursin, S. Qureshi, H. Ma, E. Lee, R. Sirous, M. Sirous, J. W. Lee, J. Kim, D. Salem, R. Kamal, M. Hartman, H. Miao, K. S. Chia, C. Nagata, S. Vinayak, R. Ndumia, C. H. van Gils, J. O. Wanders, B. Peplonska, A. Bukowska, S. Allen, S. Vinnicombe, S. Moss, A. M. Chiarelli, L. Linton, G. Maskarinec, M. J. Yaffe, N. F. Boyd, I. Dos-Santos-Silva and V. A. McCormack (2016). "Mammographic density assessed on paired raw and processed digital images and on paired screen-film and digital images across three mammography systems." Breast Cancer Res 18(1): 130. [link]
  • Chittoor, G., J. W. Kent, Jr., M. Almeida, S. Puppala, V. S. Farook, S. A. Cole, K. Haack, H. H. Goring, J. W. MacCluer, J. E. Curran, M. A. Carless, M. P. Johnson, E. K. Moses, L. Almasy, M. C. Mahaney, D. M. Lehman, R. Duggirala, A. G. Comuzzie, J. Blangero and V. S. Voruganti (2016). "GWAS and transcriptional analysis prioritize ITPR1 and CNTN4 for a serum uric acid 3p26 QTL in Mexican Americans." BMC Genomics 17(1): 276. [link]
  • Chiu, Y. F., A. E. Justice and P. E. Melton (2016). "Longitudinal analytical approaches to genetic data." BMC Genet 17 Suppl 2: 4. [link]
  • Dunning, A. M., K. Michailidou, K. B. Kuchenbaecker, ..., J. Stone, ..., A. C. Antoniou, D. F. Easton and S. L. Edwards (2016). "Breast cancer risk variants at 6q25 display different phenotype associations and regulate ESR1, RMND1 and CCDC170." Nat Genet 48(4): 374-386. [pubmed]
  • Engelman, C. D., C. M. Greenwood, J. N. Bailey, R. M. Cantor, J. W. Kent, Jr., I. R. Konig, J. L. Bermejo, P. E. Melton, S. A. Santorico, A. Schillert, E. M. Wijsman, J. W. MacCluer and L. Almasy (2016). "Genetic Analysis Workshop 19: methods and strategies for analyzing human sequence and gene expression data in extended families and unrelated individuals." BMC Proc 10(Suppl 7): 67-70. [pubmed]
  • Haustead, D. J., A. Stevenson, V. Saxena, F. Marriage, M. Firth, R. Silla, L. Martin, K. F. Adcroft, S. Rea, P. J. Day, P. Melton, F. M. Wood and M. W. Fear (2016). "Transcriptome analysis of human ageing in male skin shows mid-life period of variability and central role of NF-kappaB." Sci Rep 6: 26846. [pubmed]
  • Hopper, J. L., T. L. Nguyen, J. Stone, K. Aujard, M. C. Matheson, M. J. Abramson, J. A. Burgess, E. H. Walters, G. S. Dite, M. Bui, C. Evans, E. Makalic, D. F. Schmidt, G. Ward, M. A. Jenkins, G. G. Giles, S. C. Dharmage and C. Apicella (2016). "Childhood body mass index and adult mammographic density measures that predict breast cancer risk." Breast Cancer Res Treat 156(1): 163-170. [pubmed]
  • Kaartokallio, T., A. I. Lokki, H. Peterson, K. Kivinen, L. Hiltunen, E. Salmela, T. Lappalainen, P. Maanselka, S. Heino, S. Knuutila, A. Sayed, L. Poston, S. P. Brennecke, M. P. Johnson, L. Morgan, E. K. Moses, J. Kere and H. Laivuori (2016). "Preeclampsia does not share common risk alleles in 9p21 with coronary artery disease and type 2 diabetes." Ann Med 48(5): 330-336. [pubmed]
  • Khoo, S. K., M. Makela, D. Chandler, E. N. Schultz, S. E. Jamieson, J. Goldblatt, T. Haahtela, P. LeSouef and G. Zhang (2016). "No simple answers for the Finnish and Russian Karelia allergy contrast: Methylation of CD14 gene." Pediatr Allergy Immunol 27(7): 721-727. [link]
  • Krishnan, K., L. Baglietto, C. Apicella, J. Stone, M. C. Southey, D. R. English, G. G. Giles and J. L. Hopper (2016). "Mammographic density and risk of breast cancer by mode of detection and tumor size: a case-control study." Breast Cancer Res 18(1): 63. [link]
  • McCarthy, N. S., S. M. Allan, D. Chandler, A. Jablensky and B. Morar (2016). "Integrity of genome-wide genotype data from low passage lymphoblastoid cell lines." Genom Data 9: 18-21. [pubmed]
  • McCarthy, N. S., P. E. Melton, S. V. Ward, S. M. Allan, M. Dragovic, M. L. Clark, B. Morar, J. P. Rubio, J. Blangero, J. C. Badcock, V. A. Morgan, E. K. Moses and A. Jablensky (2016). "Exome array analysis suggests an increased variant burden in families with schizophrenia." Schizophr Res 185: 9-16. [pubmed]
  • McCormack, V. A., A. Burton, I. Dos-Santos-Silva, J. H. Hipwell, C. Dickens, D. Salem, R. Kamal, M. Hartman, C. P. Lee, K. S. Chia, V. Ozmen, M. E. Aribal, A. A. Flugelman, M. Lajous, R. Lopez-Riduara, M. Rice, I. Romieu, G. Ursin, S. Qureshi, H. Ma, E. Lee, C. H. van Gils, J. O. Wanders, S. Vinayak, R. Ndumia, S. Allen, S. Vinnicombe, S. Moss, J. Won Lee, J. Kim, A. Pereira, M. L. Garmendia, R. Sirous, M. Sirous, B. Peplonska, A. Bukowska, R. M. Tamimi, K. Bertrand, C. Nagata, A. Kwong, C. Vachon, C. Scott, B. Perez-Gomez, M. Pollan, G. Maskarinec, G. Giles, J. Hopper, J. Stone, N. Rajaram, S. H. Teo, S. Mariapun, M. J. Yaffe, J. Schuz, A. M. Chiarelli, L. Linton and N. F. Boyd (2016). "International Consortium on Mammographic Density: Methodology and population diversity captured across 22 countries." Cancer Epidemiol 40: 141-151. [pubmed]
  • Melton, P. E., J. M. Peralta and L. Almasy (2016). "Constrained multivariate association with longitudinal phenotypes." BMC Proc 10(Suppl 7): 329-332. [pubmed]
  • Mosher, M. J., P. Melton, P. Stapleton, M. S. Schanfield and M. H. Crawford (2016). "Patterns of DNA methylation across the leptin core promoter in four diverse Asian and north American populations." Human Biology 88(2): 121-135. [link]
  • Peralta, J. M., M. Almeida, L. J. Abraham, E. Moses and J. Blangero (2016). "Finding potential cis-regulatory loci using allele-specific chromatin accessibility as weights in a kernel-based variance component test." BMC Proc 10(Suppl 7): 103-108. [pubmed]
  • Pickering, J. L., A. Prosser, K. J. Corscadden, C. de Gier, P. C. Richmond, G. Zhang, R. B. Thornton and L.-A. S. Kirkham (2016). "Haemophilus haemolyticus Interaction with Host Cells Is Different to Nontypeable Haemophilus influenzae and Prevents NTHi Association with Epithelial Cells." Frontiers in Cellular and Infection Microbiology 6: 50. [link]
  • Ried, J. S., M. J. Jeff, A. Y. Chu, ..., G. Cadby, ..., J. N. Hirschhorn, M. Muller-Nurasyid and R. J. Loos (2016). "A principal component meta-analysis on multiple anthropometric traits identifies novel loci for body shape." Nat Commun 7: 13357. [pubmed]
  • Zhang, G., K. Wang, E. Schultz, S.-K. Khoo, X. Zhang, A. Annamalay, I. A. Laing, B. J. Hales, J. Goldblatt and P. N. Le Souëf (2016). "Western environment/lifestyle is associated with increased genome methylation and decreased gene expression in Chinese immigrants living in Australia." Environmental and Molecular Mutagenesis 57(1): 65-73. [link]
Published abstracts
  • Cadby, G., P. Melton, N. McCarthy, J. Hui, J. Beilby, A. W. Musk, A. L. James, J. Hung, J. Blangero and E. K. Moses (2016). Genetic Correlation of Lung Function with Anthropometric Measures in the Busselton Health Study. Genetic Epidemiology. 40: 625-626.
  • Jones, R. M., P. E. Melton, A. Rea, E. Ingley, M. L. Ballinger, D. J. Wood, D. M. Thomas and E. K. Moses (2016). Whole Exome Sequencing in Multigenerational Mixed Cancer Families Identifies a Putative Risk Variant in the PDIA2 Gene. Genetic Epidemiology. 40: 644.
Theses
  • Alghamdi, M. A. S. (2016). Investigation of the role of epigenetic modification in keloid scar pathology. Doctor of Philosophy, The University of Western Australia. [link]
  • Stevenson, A. W. (2016). Investigating the role of epigenetics in scar maintenance. Doctor of Philosophy, The University of Western Australia. [link]
  • Ward, K. L. (2016). Effective assessment of accident risk in obstructive sleep apnoea. Doctor of Philosophy, The University of Western Australia. [link]
 

Publications 2015

Wednesday, 23 March 2016

Journal articles
  • Blackburn, A., M. Almeida, A. Dean, J. E. Curran, M. P. Johnson, E. K. Moses, L. J. Abraham, M. A. Carless, T. D. Dyer, S. Kumar, L. Almasy, M. C. Mahaney, A. Comuzzie, S. Williams-Blangero, J. Blangero, D. M. Lehman, and H. H. Goring (2015). "Effects of Copy Number Variable Regions on Local Gene Expression in White Blood Cells of Mexican Americans." Eur J Hum Genet 23(9):1229-35. [pubmed]
  • Brown, C. E., N. S. McCarthy, A. D. Hughes, P. Sever, A. Stalmach, W. Mullen, A. F. Dominiczak, N. Sattar, H. Mischak, S. Thom, J. Mayet, A. V. Stanton, and C. Delles (2015). "Urinary Proteomic Biomarkers to Predict Cardiovascular Events." Proteomics Clin Appl 9(5-6): 610-7. [pubmed]
  • Cadby, G., N. McArdle, T. Briffa, D. R. Hillman, L. Simpson, M. Knuiman, and J. Hung (2015). "Severity of Obstructive Sleep Apnea Is an Independent Predictor of Incident Atrial Fibrillation Hospitalization in a Large Sleep-Clinic Cohort." Chest 148(4): 945-952. [pubmed]
  • Darabi, H., K. McCue, J. Beesley, K. Michailidou, S. Nord, S. Kar, K. Humphreys, D. Thompson, M. Ghoussaini, M. K. Bolla, J. Dennis, Q. Wang, S. Canisius, C. G. Scott, C. Apicella, J. L. Hopper, M. C. Southey, J. Stone, ..., D. F. Easton, P. Hall, and G. Chenevix-Trench (2015). "Polymorphisms in a Putative Enhancer at the 10q21.2 Breast Cancer Risk Locus Regulate NRBF2 Expression."  Am J Hum Genet 97(1): 22-34. [pubmed]
  • Hobbs, M. M., D. Taylor, S. Buzynski and R. Peake (2015). "Contrast-enhanced spectral mammography (CESM) and contrast enhanced MRI (CEMRI): Patient preferences and tolerance." Journal of Medical Imaging and Radiation Oncology 59(3): 300-305. [link]
  • Law, M. H., D. T. Bishop, J. E. Lee, M. Brossard, N. G. Martin, E. K. Moses, ..., S. V. Ward, N. K. Hayward, J. Han, H. J. Schulze, A. M. Dunning, J. A. Bishop, F. Demenais, C. I. Amos, S. MacGregor and M. M. Iles (2015). "Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma." Nat Genet 47(9): 987-995. [pubmed]
  • Li, S., E. M. Wong, J. E. Joo, C. H. Jung, J. Chung, C. Apicella, J. Stone, G. S. Dite, G. G. Giles, M. C. Southey, and J. L. Hopper (2015). "Genetic and Environmental Causes of Variation in the Difference Between Biological Age Based on DNA Methylation and Chronological Age for Middle-Aged Women."  Twin Res Hum Genet 18(6): 720-6. [pubmed]
  • Lin, W. Y., N. J. Camp, M. Ghoussaini, J. Beesley, K. Michailidou, J. L. Hopper, C. Apicella, M. C. Southey, J. Stone, ..., A. Dunning, D. F. Easton and A. Cox (2015). "Identification and Characterization of Novel Associations in the Casp8/Als2cr12 Region on Chromosome 2 with Breast Cancer Risk." Hum Mol Genet 24(1): 285-298. [pubmed]
  • Orr, N., F. Dudbridge, N. Dryden, S. Maguire, D. Novo, E. Perrakis, N. Johnson, M. Ghoussaini, J. L. Hopper, M. C. Southey, C. Apicella, J. Stone, ..., Genica Network, Investigators kConFab, and Group Australian Ovarian Cancer Study (2015). "Fine-mapping identifies two additional breast cancer susceptibility loci at 9q31.2." Hum Mol Genet 24(10): 2966-84. [pubmed]
  • Peters, M. J., R. Joehanes, L. C. Pilling,..., E. K. Moses, ..., A. Teumer, J. B. van Meurs, and A. D. Johnson (2015). "The transcriptional landscape of age in human peripheral blood." Nat Commun 6: 8570. [pubmed]
  • Rubicz, R., R. Yolken, E. Drigalenko, M. A. Carless, T. D. Dyer, J. Kent, J. Curran, M. Johnson, S. Cole, S. Fowler, R. Arya, S. Puppala, L. Almasy, E. K. Moses, E. Kraig, R. Duggirala, J. Blangero, C. Leach and H. Göring (2015). "Genome-wide genetic investigation of serological measures of common infections" Eur J Hum Genet 23(11): 1544-8. [pubmed]
  • Sneddon, S., J. S. Leon, I. M. Dick, G. Cadby, N. Olsen, F. Brims, R. J. Allcock, E. K. Moses, P. E. Melton, N. de Klerk, A. W. Musk, B. W. Robinson, and J. Creaney (2015). "Absence of Germline Mutations in Bap1 in Sporadic Cases of Malignant Mesothelioma." Gene 563(1): 103-105. [pubmed]
  • Stone, J., D. J. Thompson, I. Dos Santos Silva, C. Scott, R. M. Tamimi, S. Lindstrom, P. Kraft, A. Hazra, J. Li, L. Eriksson, K. Czene, P. Hall, M. Jensen, J. Cunningham, J. E. Olson, K. Purrington, F. J. Couch, J. Brown, J. Leyland, R. M. Warren, R. N. Luben, K. T. Khaw, P. Smith, N. J. Wareham, S. M. Jud, K. Heusinger, M. W. Beckmann, J. A. Douglas, K. P. Shah, H. P. Chan, M. A. Helvie, L. Le Marchand, L. N. Kolonel, C. Woolcott, G. Maskarinec, C. Haiman, G. G. Giles, L. Baglietto, K. Krishnan, M. C. Southey, C. Apicella, I. L. Andrulis, J. A. Knight, G. Ursin, G. I. Alnaes, V. N. Kristensen, A. L. Borresen-Dale, I. T. Gram, M. K. Bolla, Q. Wang, K. Michailidou, J. Dennis, J. Simard, P. Pharoah, A. M. Dunning, D. F. Easton, P. A. Fasching, V. S. Pankratz, J. L. Hopper, and C. M. Vachon (2015). "Novel Associations between Common Breast Cancer Susceptibility Variants and Risk-Predicting Mammographic Density Measures." Cancer Res 75(12): 2457-67. [pubmed]
  • Thomsen, L. C., P. E. Melton, K. Tollaksen, I. Lyslo, L. T. Roten, M. L. Odland, K. M. Strand, O. Nygard, C. Sun, A. C. Iversen, R. Austgulen, E. K. Moses, and L. Bjorge (2015). "Refined phenotyping identifies links between preeclampsia and related diseases in a Norwegian preeclampsia family cohort." J Hypertens 33(11): 2294-302.
  • Ward, S. V., J. G. Dowty, R. J. Webster, G. Cadby, E. J. Glasson, J. S. Heyworth, J. Emery, J. M. Cole, M. J. Millward, F. M. Wood, and L. J. Palmer (2015). "The aggregation of early-onset melanoma in young Western Australian families."  Cancer Epidemiol 39(3): 346-52. [link]
  • Winkler, T. W., A. E. Justice, M. Graff, ..., G. Cadby, ..., K. E. North, I. B. Borecki, Z. Kutalik, and R. J. Loos (2015). "The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study." PLoS Genet 11(10): e1005378. [pubmed]
Published abstracts
  • Moses, E., P. Melton, M. Johnson, D. Gokhale-Agashe, A. Rea, R. Allcock, J. Blangero and S. Brennecke (2015). O4. Genome wide sequencing approaches to identify missing heritability of preeclampsia. Pregnancy Hypertension: An International Journal of Women's Cardiovascular Health. 5: 209-210.
  • Thomsen, L. C., N. McCarthy, P. Melton, G. Cadby, R. Austgulen, E. Moses, L. Bjørge and A.-C. Iversen (2015). P36. Identifying a novel link between preeclampsia and chronic hypertension in the MTHFR-gene using the population based Norwegian HUNT Study. Pregnancy Hypertens. 5: 243-244.
  • Thomsen, L. C., N. McCarthy, P. E. Melton, K. Tollaksen, I. Lyslo, P. Solberg, L. T. Roten, O. K. Nygard, G. Cadby, R. Austgulen, E. K. Moses, A. C. Iversen and L. Bjorge (2015). [278-POS]: A genetic connection between preeclampsia and chronic hypertension in Norwegian families. Pregnancy Hypertens. 5: 138-139.
  • Yong, H. E., P. E. Melton, M. P. Johnson, K. A. Freed, B. Kalionis, P. Murthi, S. P. Brennecke, R. J. Keogh and E. K. Moses (2015). [81-OR]: Genome-wide transcriptome directed pathway analysis of maternal preeclampsia susceptibility genes. Pregnancy Hypertens. 5: 43-44.
Theses
  • Peake, R. (2015). Identifying genomic variants associated with mammographic density, a strong and heritable breast cancer risk factor. BSc Honours, The University of Western Australia.
  • Wood, R. (2015). Risk factors associated with primary cutaneous melanoma development of different anatomic sites among melanoma patients. B Med Sci Honours, The University of Western Australia.

Publications 2014

Tuesday, 10 March 2015

Journal articles
  • Ahsan, H., J. Halpern, M. G. Kibriya, ..., J. Stone, ..., D. F. Easton, N. J. Cox and A. S. Whittemore (2014). "A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age." Cancer Epidemiology Biomarkers and Prevention 23(4): 658-669. [pubmed]
  • Baglietto, L., K. Krishnan, J. Stone, C. Apicella, M. C. Southey, D. R. English, J. L. Hopper and G. G. Giles (2014). "Associations of mammographic dense and nondense areas and body mass index with risk of breast cancer." Am J Epidemiol 179(4): 475-483. [link]
  • Baldi, N. F., P. E. Melton and M. H. Crawford (2014). "Effect of Recent Historical Events on Migration and Isonymic Stratification among the Rama Amerindians from Nicaragua." Hum Biol 86(1): 37-50. [pubmed]
  • Bickeböller, H., J. N. Bailey, J. Beyene, R. M. Cantor, H. J. Cordell, R. C. Culverhouse, C. D. Engelman, D. W. Fardo, S. Ghosh, I. R. König, J. Lorenzo Bermejo, P. E. Melton, S. A. Santorico, G. A. Satten, L. Sun, N. L. Tintle, A. Ziegler, J. W. MacCluer and L. Almasy (2014). "Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees." BMC Proc 8(Suppl 1): S1-S1. [link]
  • Bozaoglu, K., C. Attard, H. Kulkarni, N. Cummings, V. P. Diego, M. A. Carless, K. A. Shields, M. P. Johnson, S. Kowlessur, T. D. Dyer, A. G. Comuzzie, L. Almasy, P. Zimmet, E. K. Moses, H. H. Goring, J. E. Curran, J. Blangero and J. B. Jowett (2014). "Plasma levels of soluble interleukin 1 receptor accessory protein are reduced in obesity." J Clin Endocrinol Metab 99(9): 3435-3443. [pubmed]
  • Cadby, G., S. V. Ward, J. M. Cole, E. K. Moses, M. Millward and L. J. Palmer (2014). "The association of host and genetic melanoma risk factors with Breslow thickness in the Western Australian Melanoma Health Study." Br J Dermatol 170(4): 851-857. [link]
  • Fernandez-Navarro, P., A. Gonzalez-Neira, G. Pita, R. Diaz-Uriarte, L. Tais Moreno, M. Ederra, C. Pedraz-Pingarron, C. Sanchez-Contador, J. A. Vazquez-Carrete, P. Moreo, C. Vidal, D. Salas-Trejo, J. Stone, M. C. Southey, J. L. Hopper, B. Perez-Gomez, J. Benitez and M. Pollan (2014). "Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21." Int J Cancer 136(10):2427-36. [pubmed]
  • Iles, M. M., D. T. Bishop, J. C. Taylor, N. K. Hayward, M. Brossard, A. E. Cust, A. M. Dunning, J. E. Lee, E. K. Moses, L. A. Akslen, P. A. Andresen, M. F. Avril, E. Azizi, G. B. Scarra, K. M. Brown, T. Debniak, D. E. Elder, E. Friedman, P. Ghiorzo, E. M. Gillanders, A. M. Goldstein, N. A. Gruis, J. Hansson, M. Harland, P. Helsing, M. Hocevar, V. Hoiom, C. Ingvar, P. A. Kanetsky, M. T. Landi, J. Lang, G. M. Lathrop, J. Lubinski, R. M. Mackie, N. G. Martin, A. Molven, G. W. Montgomery, S. Novakovic, H. Olsson, S. Puig, J. A. Puig-Butille, G. L. Radford-Smith, J. Randerson-Moor, N. van der Stoep, R. van Doorn, D. C. Whiteman, S. MacGregor, K. A. Pooley, S. V. Ward, G. J. Mann, C. I. Amos, P. D. Pharoah, F. Demenais, M. H. Law, J. A. Newton Bishop and J. H. Barrett (2014). "The effect on melanoma risk of genes previously associated with telomere length." J Natl Cancer Inst 106(10): dju267. [pubmed]
  • Jones, R. M., G. Cadby, J. Blangero, L. J. Abraham, A. J. Whitehouse and E. K. Moses (2014). "MACROD2 gene associated with autistic-like traits in a general population sample." Psychiatr Genet 24(6): 241-248. [pubmed]
  • Kaskow, B. J., L. A. Diepeveen, J. M. Proffitt, A. J. Rea, D. Ulgiati, J. Blangero, E. K. Moses and L. J. Abraham (2014). "Molecular prioritization strategies to identify functional genetic variants in the cardiovascular disease-associated expression QTL Vanin-1." Eur J Hum Genet 22(5): 688-695. [pubmed]
  • Khan, S., D. Greco, K. Michailidou, R. L. Milne, ..., J. Stone, ..., K. Aittomaki, D. F. Easton and H. Nevanlinna (2014). "MicroRNA related polymorphisms and breast cancer risk." PLoS One 9(11): e109973. [pubmed]
  • Lindstrom, S., D. J. Thompson, A. D. Paterson, J. Li, G. L. Gierach, C. Scott, J. Stone, J. A. Douglas, I. dos-Santos-Silva, P. Fernandez-Navarro, J. Verghase, P. Smith, J. Brown, R. Luben, N. J. Wareham, R. J. Loos, J. A. Heit, V. S. Pankratz, A. Norman, E. L. Goode, J. M. Cunningham, M. deAndrade, R. A. Vierkant, K. Czene, P. A. Fasching, L. Baglietto, M. C. Southey, G. G. Giles, K. P. Shah, H. P. Chan, M. A. Helvie, A. H. Beck, N. W. Knoblauch, A. Hazra, D. J. Hunter, P. Kraft, M. Pollan, J. D. Figueroa, F. J. Couch, J. L. Hopper, P. Hall, D. F. Easton, N. F. Boyd, C. M. Vachon and R. M. Tamimi (2014). "Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk." Nat Commun 5: 5303. [pubmed]
  • Løset, M., M. P. Johnson, P. E. Melton, W. Ang, R. C. Huang, T. A. Mori, L. J. Beilin, C. Pennell, L. T. Roten, A.-C. Iversen, R. Austgulen, C. E. East, J. Blangero, S. P. Brennecke and E. K. Moses (2014). "Preeclampsia and cardiovascular disease share genetic risk factors on chromosome 2q22." Pregnancy Hypertension 4(2): 178-185. [link]
  • McCarthy, N. S., P. E. Melton, G. Cadby, S. Yazar, M. Franchina, E. K. Moses, D. A. Mackey and A. W. Hewitt (2014). "Meta-analysis of human methylation data for evidence of sex-specific autosomal patterns." BMC Genomics 15(1): 981. [pubmed]
  • McCarthy, N. S., C. Vangjeli, G. L. Cavalleri, N. Delanty, K. V. Shianna, P. Surendran, E. O'Brien, P. B. Munroe, N. Masca, M. Tomaszewski, N. J. Samani and A. V. Stanton (2014). "Two further blood pressure loci identified in ion channel genes with a gene-centric approach." Circ Cardiovasc Genet 7(6): 873-879. [pubmed]
  • Melton, P. E. and L. A. Almasy (2014). "Bivariate association analysis of longitudinal phenotypes in families." BMC Proc 8(Suppl 1): S90-S90. [publink]
  • Pettersson, A., R. E. Graff, G. Ursin, I. D. Santos Silva, V. McCormack, L. Baglietto, C. Vachon, M. F. Bakker, G. G. Giles, K. S. Chia, K. Czene, L. Eriksson, P. Hall, M. Hartman, R. M. Warren, G. Hislop, A. M. Chiarelli, J. L. Hopper, K. Krishnan, J. Li, Q. Li, I. Pagano, B. A. Rosner, C. S. Wong, C. Scott, J. Stone, G. Maskarinec, N. F. Boyd, C. H. van Gils and R. M. Tamimi (2014). "Mammographic Density Phenotypes and Risk of Breast Cancer: A Meta-analysis." J Natl Cancer Inst 106(5): dju078. [pubmed]
  • Rubicz, R., R. Yolken, A. Alaedini, E. Drigalenko, J. C. Charlesworth, M. A. Carless, E. G. Severance, B. Krivogorsky, T. D. Dyer, J. W. Kent, Jr., J. E. Curran, M. P. Johnson, S. A. Cole, L. Almasy, E. K. Moses, J. Blangero and H. H. Goring (2014). "Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens." Genet Epidemiol 38(5): 439-446. [pubmed]
  • Seyerle, A. A., A. M. Young, J. M. Jeff, P. E. Melton, N. W. Jorgensen, Y. Lin, C. L. Carty, E. Deelman, S. R. Heckbert, L. A. Hindorff, R. D. Jackson, L. W. Martin, P. M. Okin, M. V. Perez, B. M. Psaty, E. Z. Soliman, E. A. Whitsel, K. E. North, S. Laston, C. Kooperberg and C. L. Avery (2014). "Evidence of heterogeneity by race/ethnicity in genetic determinants of QT interval." Epidemiology 25(6): 790-798. [pubmed]
  • Simino, J., G. Shi, J. C. Bis, D. I. Chasman, G. B. Ehret, X. Gu, X. Guo, S. J. Hwang, E. Sijbrands, A. V. Smith, G. C. Verwoert, J. L. Bragg-Gresham, G. Cadby, ..., J. C. Witteman, A. Chakravarti and D. C. Rao (2014). "Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia." Am J Hum Genet 95(1): 24-38. [pubmed]
  • Thompson, P. M., J. L. Stein, S. E. Medland, ..., E. K. Moses, ..., N. B. Freimer, N. S. Lawrence and W. Drevets (2014). "The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data." Brain Imaging Behav 8(2): 153-182. [pubmed]
  • Warwick, J., H. Birke, J. Stone, R. Warren, E. Pinney, A. R. Brentnall, S. W. Duffy, A. Howell and J. Cuzick (2014). "Mammographic breast density refines Tyrer-Cuzick estimates of breast cancer risk in high risk women: findings from the placebo arm of the international breast cancer intervention study-I." Breast Cancer Res 16(5): 451. [link]
  • Wu, Z., Y. Hu and P. E. Melton (2014). "Longitudinal data analysis for genetic studies in the whole-genome sequencing era." Genet Epidemiol 38(Suppl 1): S74-80. [pubmed]
  • Yong, H. E., P. Murthi, A. Borg, B. Kalionis, E. K. Moses, S. P. Brennecke and R. J. Keogh (2014). "Increased decidual mRNA expression levels of candidate maternal pre-eclampsia susceptibility genes are associated with clinical severity." Placenta 35(2): 117-124. [pubmed]
Theses
  • Allen, S. M. (2014). High-resolution linkage and association analysis of cognitive deficit in the Western Australian Family Study of Schizophrenia. BSc Honours, The University of Western Australia.
  • Loset, M. (2014). Genetic predisposition to preeclampsia: Genetic association studies on population-based cohorts and transcriptional studies on decidua basalis tissue. Doctor of Philosophy, Norwegian University of Science and Technology.
  • Tuson, M. (2014). Longitudinal data analysis for genetic studies using whole-genome sequencing data. BSc Honours, The University of Western Australia.
 

Publications 2013

Thursday, 30 January 2014

Journal articles
  • Berndt, S. I., S. Gustafsson, R. Magi, ..., G. Cadby, ..., K. E. North, R. J. Loos and E. Ingelsson (2013). "Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture." Nat Genet 45(5): 501-512. [pubmed]
  • Cadby, G., S. Mukherjee, A. W. Musk, A. Reid, M. Garlepp, I. Dick, C. Robinson, J. Hui, G. Fiorito, S. Guarrera, J. Beilby, P. E. Melton, E. K. Moses, D. Ugolini, D. Mirabelli, S. Bonassi, C. Magnani, I. Dianzani, G. Matullo, B. Robinson, J. Creaney and L. J. Palmer (2013). "A genome-wide association study for malignant mesothelioma risk." Lung Cancer 82(1): 1-8. [pubmed]
  • Chittoor, G., V. S. Farook, S. Puppala, S. P. Fowler, J. Schneider, T. D. Dyer, S. A. Cole, J. L. Lynch, J. E. Curran, L. Almasy, J. W. Maccluer, A. G. Comuzzie, D. E. Hale, R. S. Ramamurthy, D. J. Dudley, E. K. Moses, R. Arya, D. M. Lehman, C. P. Jenkinson, B. S. Bradshaw, R. A. Defronzo, J. Blangero and R. Duggirala (2013). "Localization of a major susceptibility locus influencing preterm birth." Mol Hum Reprod 19(10): 687-96. [pubmed]
  • Johnson, M. P., S. P. Brennecke, C. E. East, T. D. Dyer, L. T. Roten, J. M. Proffitt, P. E. Melton, M. H. Fenstad, T. Aalto-Viljakainen, K. Makikallio, S. Heinonen, E. Kajantie, J. Kere, H. Laivuori, R. Austgulen, J. Blangero and E. K. Moses (2013). "Genetic dissection of the pre-eclampsia susceptibility locus on chromosome 2q22 reveals shared novel risk factors for cardiovascular disease." Mol Hum Reprod 19(7): 423-437. [pubmed]
  • Jones, R. M., G. Cadby, P. E. Melton, L. J. Abraham, A. J. Whitehouse and E. K. Moses (2013). "Genome-wide association study of autistic-like traits in a general population study of young adults." Front Hum Neurosci 7: 658. [pubmed]
  • Jones, R. M., Wood, D. (2013). "Sarcoma genomics." Bone and Joint360 2(6): 2-8. [link]
  • Kochunov, P., J. Charlesworth, A. Winkler, L. E. Hong, T. E. Nichols, J. E. Curran, E. Sprooten, N. Jahanshad, P. M. Thompson, M. P. Johnson, J. W. Kent, Jr., B. A. Landman, B. Mitchell, S. A. Cole, T. D. Dyer, E. K. Moses, H. H. Goring, L. Almasy, R. Duggirala, R. L. Olvera, D. C. Glahn and J. Blangero (2013). "Transcriptomics of cortical gray matter thickness decline during normal aging." Neuroimage 82C: 273-283. [pubmed]
  • Lian, I. A., M. Langaas, E. Moses and A. Johansson (2013). "Differential gene expression at the maternal-fetal interface in preeclampsia is influenced by gestational age." PLoS One 8(7): e69848. [pubmed]
  • Matullo, G., S. Guarrera, M. Betti, G. Fiorito, D. Ferrante, F. Voglino, G. Cadby, C. Di Gaetano, F. Rosa, A. Russo, A. Hirvonen, E. Casalone, S. Tunesi, M. Padoan, M. Giordano, A. Aspesi, C. Casadio, F. Ardissone, E. Ruffini, P. G. Betta, R. Libener, R. Guaschino, E. Piccolini, M. Neri, A. W. Musk, N. H. de Klerk, J. Hui, J. Beilby, A. L. James, J. Creaney, B. W. Robinson, S. Mukherjee, L. J. Palmer, D. Mirabelli, D. Ugolini, S. Bonassi, C. Magnani and I. Dianzani (2013). "Genetic variants associated with increased risk of malignant pleural mesothelioma: a genome-wide association study." PLoS One 8(4): e61253. [pubmed]
  • Melton, P. E., N. F. Baldi, R. Barrantes and M. H. Crawford (2013). "Microevolution, migration, and the population structure of five Amerindian populations from Nicaragua and Costa Rica." Am J Hum Biol 25(4): 480-490. [link]
  • Melton, P. E., M. A. Carless, J. E. Curran, T. D. Dyer, H. H. Goring, J. W. Kent, Jr., E. Drigalenko, M. P. Johnson, J. W. Maccluer, E. K. Moses, A. G. Comuzzie, M. C. Mahaney, D. H. O'Leary, J. Blangero and L. Almasy (2013). "Genetic architecture of carotid artery intima-media thickness in Mexican Americans." Circ Cardiovasc Genet 6(2): 211-221. [pubmed]
  • Pandey, G. S., C. Yanover, L. M. Miller-Jenkins, S. Garfield, S. A. Cole, J. E. Curran, E. K. Moses, N. Rydz, V. Simhadri, C. Kimchi-Sarfaty, D. Lillicrap, K. R. Viel, T. M. Przytycka, G. F. Pierce, T. E. Howard, Z. E. Sauna, J. Lusher, M. Chitlur, A. Ameri, K. Natarajan, R. V. Iyer, A. A. Thompson, R. G. Watts, C. L. Kempton, C. Kessler, J. C. Barrett, E. J. Martin, N. Key, R. Kruse-Jarres, C. Lessinger, K. P. Pratt, N. Josephson, K. McRedmond, J. Withycombe, C. Walsh, D. Matthews, J. Mahlangu, A. Krause, R. Schwyzer, R. Thejpal, N. Rapiti, Y. Goga, M. Coetzee, D. Stones, K. Mann, S. Butenas, L. Almasy, J. Blangero, M. Carless, R. Raja and E. Reed (2013). "Endogenous factor VIII synthesis from the intron 22-inverted F8 locus may modulate the immunogenicity of replacement therapy for hemophilia A." Nat Med 19(10): 1318-1324. [pubmed]
  • Peters, K. E., J. Beilby, G. Cadby, N. M. Warrington, D. G. Bruce, W. A. Davis, T. M. Davis, S. Wiltshire, M. Knuiman, B. M. McQuillan, L. J. Palmer, P. L. Thompson and J. Hung (2013). "A comprehensive investigation of variants in genes encoding adiponectin (ADIPOQ) and its receptors (ADIPOR1/R2), and their association with serum adiponectin, type 2 diabetes, insulin resistance and the metabolic syndrome." BMC Med Genet 14: 15. [pubmed]
  • Rubicz, R., R. Yolken, E. Drigalenko, M. A. Carless, T. D. Dyer, L. Bauman, P. E. Melton, J. W. Kent, Jr., J. B. Harley, J. E. Curran, M. P. Johnson, S. A. Cole, L. Almasy, E. K. Moses, N. V. Dhurandhar, E. Kraig, J. Blangero, C. T. Leach and H. H. Goring (2013). "A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1)." PLoS Genet 9(1): e1003147. [pubmed]
  • Voruganti, V. S., J. W. Kent, Jr., S. Debnath, S. A. Cole, K. Haack, H. H. Goring, M. A. Carless, J. E. Curran, M. P. Johnson, L. Almasy, T. D. Dyer, J. W. Maccluer, E. K. Moses, H. E. Abboud, M. C. Mahaney, J. Blangero and A. G. Comuzzie (2013). "Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans." Front Genet 4: 279. [pubmed]
  • Yadav, S., I. Cotlarciuc, P. B. Munroe, M. S. Khan, M. A. Nalls, S. Bevan, Y. C. Cheng, W. M. Chen, R. Malik, N. S. McCarthy, E. G. Holliday, D. Speed, N. Hasan, M. Pucek, P. E. Rinne, P. Sever, A. Stanton, D. C. Shields, J. M. Maguire, M. McEvoy, R. J. Scott, L. Ferrucci, M. J. Macleod, J. Attia, H. S. Markus, M. M. Sale, B. B. Worrall, B. D. Mitchell, M. Dichgans, C. Sudlow, J. F. Meschia, P. M. Rothwell, M. Caulfield and P. Sharma (2013). "Genome-Wide Analysis of Blood Pressure Variability and Ischemic Stroke." Stroke 44(10): 2703-2709. [pubmed]
Published abstracts
  • Løset, M., M. P. Johnson, P. E. Melton, W. Ang, J. Marsh, R.-C. Huang, T. Mori, L. Beilin, C. Pennell, L. T. Roten, A.-C. Iversen, R. Austgulen, C. E. East, J. Blangero, S. P. Brennecke and E. K. Moses (2013). OP004. A SNP associated with susceptibility to preeclampsia near the inhibin, beta B gene, is also associated with cardiovascular disease risk traits. Pregnancy Hypertens. 3: 63.
  • Roten, L. T., M. P. Johnson, L. C. Thompsen, A. S. Gundersen, P. Solberg, K. Tollaksen, I. Lyslo, C. Tappert, M. L. Odland, K. M. Strand, M. H. Fenstad, F. Drablos, F. Skorpen, E. K. Moses, R. Austgulen and L. Bjorge (2013). OP006. A preeclampsia genome-wide linkage scan in norwegian families. Pregnancy Hypertens. 3: 64.
  • Ward, S., L. Palmer, J. Cole, F. Wood and J. Heyworth (2013). Validation of self-reported melanoma diagnosis history. Pigment Cell and Melanoma Research. 26: 1013.
  • Ward, S., L. Palmer, J. M. Cole, F. Wood and J. Heyworth (2013). Validation of self-reported melanoma diagnosis history. Society for Melanoma Research 2013 Congress, Wiley-Blackwell. 26: 932-1019.
Theses
  • Simpson, L. (2013). Investigating the contribution of genes, fat distribution, and physical inactibity in obstructive sleep apnoea. Doctor of Philosophy, The University of Western Australia. [link]
  • Ward, S. (2013). The genetic epidemiology of melanoma in Western Australia: the Western Australian melanoma health study, familial aggregation of melanoma and scar outcome post-melanoma excision. Doctor of Philosophy, The University of Western Australia. [link]
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